GeneticsLabels vs DNA
Indica or sativa? The DNA barely agrees with the label
Across three public DNA panels, the word on the jar lines up only weakly with measured genetics. The DNA isn't clueless, though. It's just reading a different menu, and the thing it tracks clearly is something most menus print in small type.
In this story
The "sativa" that put you on the couch#
Almost everyone has a story. The "energising sativa" that glued you to the sofa. The "heavy indica" that had you reorganising the kitchen at midnight, then alphabetising the spice rack. Budtenders explain it with tolerance, terpenes or the time of day. We wanted to know whether the label itself means much.
So we tested it. CannaLib holds DNA genotypes for 3,584 samples from four public datasets, each matched to the strain name it was sold under, and stated types for 72,945 strains. For every sample with a stated type, we asked one question: can the measured genetics predict the label?
How we tested it#
We turned each label into a number (indica 1, indica-dominant 0.75, hybrid 0.5, sativa-dominant 0.25, sativa 0) and asked whether the biggest patterns in each panel's DNA (the stuff that sets plants apart most) could predict it for samples the model hadn't seen. We also ran the same test 500 times with the labels shuffled at random, as a "what if it's all luck?" control.
The score is called R², and here's the plain-English version. Imagine guessing a jar's label from its DNA alone. A score of 0% means you may as well flip a coin, which is exactly what the shuffled labels scored. A score of 100% means the DNA gives the label away every single time. Anything in between is "how much of the mystery the DNA solves". We ran it on the stated type and on heritage percentages like "70% indica".
How well the DNA predicts the label
Cross-validated R², by dataset. Shuffled labels score about 0% in every panel. All six results beat chance (p ≤ 0.008, which means a fluke this big showed up in at most a handful of the 500 shuffles).
Data table
| Dataset | Stated type R² | Samples (names) | Heritage % R² | Samples (names) | p |
|---|---|---|---|---|---|
| Phylos panel (ENA PRJEB49958) | 0.149 | 1,048 (618) | 0.091 | 920 (542) | 0.002 |
| GBS-275 | 0.271 | 156 (65) | 0.057 | 77 (43) | 0.002 / 0.008 |
| Ferguson 2023 | 0.457 | 47 (32) | 0.444 | 38 (25) | 0.002 |
The label isn't random noise. In every panel it beats chance. But in the panel that looks most like a modern dispensary menu, 1,048 samples sold under 618 names, the DNA predicts only about 15% of the label. That's like watching a movie trailer and trying to guess the ending: you get the vibe, not the plot. Heritage percentages do worse, at 9%.
The label works better in the Ferguson panel, at 46%, and the reason matters. That panel mixes hemp, feral plants and drug strains, populations that really are far apart. So the label is decent at telling broad groups apart, the way anyone can tell a cat from a dog. It's poor at telling one modern hybrid from another, which is like telling two tabbies apart, and that's exactly the choice you're making at the counter.
The label is good at telling hemp from a dispensary strain. It's poor at telling one dispensary strain from another.
This fits what researchers have been finding for a decade. A 2015 study of 81 drug strains concluded that reported indica and sativa ancestry often failed to match the genetics [2]. A 2021 study found labels tracked differences at a few aroma genes rather than overall ancestry [3]. In other words, "indica" may describe how a strain smells more than where it came from.
What the label rests on#
We also looked at the evidence behind the type field in CannaLib itself. Of 72,945 strains with a stated type, most rest on a seller's or a website's say-so. Only 1,020 (about 1.4%) have that type supported by independent evidence such as inheritance, published grower literature or terpene profiles. Another 704 are disputed, where sources or evidence disagree. The rest is a lot of "trust me, bro" on a lot of labels.
What stands behind 72,945 indica / sativa labels
Each square is about 73 strains (1,000 squares in all). Amber squares are say-so, teal squares are backed up by evidence, and the handful of blue ones are busy arguing.
Data table
| Evidence behind the label | Strains | Squares (of 1,000) |
|---|---|---|
| Claimed only | 71,221 | 976 |
| Supported by evidence | 1,020 | 14 |
| Disputed | 704 | 10 |
What the DNA does see#
Here's the twist. The DNA isn't blind to how cannabis behaves. It just isn't tracking the indica / sativa word. The thing it tracks clearly is the balance of THC and CBD. Plot twist: the small print beats the big print.
Which labels show up in the genetics?
Results of separate tests in CannaLib's DNA panels.
That matches what lab tests show. CannaLib has measured the chemotype of more than 8,000 strains from two or more agreeing lab tests. 7,761 (about 96%) are THC-dominant, 219 are CBD-dominant and 77 are balanced. If you want a hint at how a strain will feel, its measured THC and CBD are a better starting point than the word indica or sativa.
So what should you look at?#
Check the measured THC and CBD range, ideally from several lab tests. Look at the terpenes the labs actually found. And trust your own notes. Your body's response to a specific strain is data too, and it's the data we have least of. You're basically a lab of one, with snacks.
Tell us your least indica indica#
Which strain completely ignored its label? The "sativa" that floored you, or the "indica" that had you cleaning the oven? Post it with #LabelVsLeaf and tag CannaLib.
Then look the strain up on CannaLib and compare its measured THC, CBD and terpenes with how it felt. Patterns in what people report are how we'll find what the label is missing.
Method and sources#
- CannaLib DNA corpus: Phylos Bioscience genotypes (European Nucleotide Archive PRJEB49958), GBS-275, Ferguson 2023 and Kannapedia; 3,584 samples. Each dataset analysed on its own. Test: 5-fold cross-validated R² of label ~ top 10 principal components, against 500 label shuffles.
- Sawler J, Stout JM, Gardner KM, Hudson D, Vidmar J, Butler L, Page JE, Myles S (2015). The genetic structure of marijuana and hemp. PLOS ONE 10(8): e0133292.
- Watts S, McElroy M, Migicovsky Z, Maassen H, van Velzen R, Myles S (2021). Cannabis labelling is associated with genetic variation in terpene synthase genes. Nature Plants 7: 1330–1334.
- Henry P et al. Cannabis genetic data (VCF and CSV) for 1409 SNP and 38 highly informative SNPs. figshare, doi:10.6084/m9.figshare.7297565 (CC BY 4.0). Used for the genotype vs terpene test (Mantel, n = 67).
- Chemotype: THC-dominant (I), balanced (II) and CBD-dominant (III), assigned where two or more flower lab tests agree. Type evidence ranking: DNA > lab > inheritance > published literature > terpenes > breeder > shop.
Pull the thread
Check what your "indica" actually descends from. Everything above is checkable in the same CannaLib tools we used.
- Explorer
Look up your own strain
Every claim, test and alias for one strain, on one card.
Open → - Lineage sky map
Explore the sky map
The family tree, drawn from recorded parent-to-child edges.
Open →
This opens the real CannaLib page inside the story, so it only loads when you ask.
curl "https://api.cannalib.org/v1/corpus"
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